plotPops

Plot species tree, with population sizes on edges.

Statistical tests for validating multispecies coalescent gene tree simulators, using pairwise distances and rooted triple counts. See Allman ES, Baños HD, Rhodes JA 2023. Testing multispecies coalescent simulators using summary statistics, IEEE/ACM Trans Comput Biol Bioinformat, 20(2):1613–1618. <doi:10.1109/TCBB.2022.3177956>.

Elizabeth Allman

MSCsimtester

Tests of Multispecies Coalescent Gene Tree Simulator Output

Hector Banos

John Rhodes

plotPops function

<dl><dt>stree</dt>
<dd>An object of class <code>phylo</code> containing a rooted metric species tree.</dd>
<dt>populations</dt>
<dd>A vector containing constant population sizes, one entry for each
edge/population in the species tree, with last entry for
the population ancestral to the root.</dd></dl>

Arguments

Plot species tree, with population sizes on edges. — plotPops

<dl>

<dt>stree</dt>
<dd>An object of class <code>phylo</code> containing a rooted metric species tree.</dd>


<dt>populations</dt>
<dd>A vector containing constant population sizes, one entry for each
edge/population in the species tree, with last entry for
the population ancestral to the root.</dd>

</dl>

plotPops: Plot species tree, with population sizes on edges.

Description

Usage

Value

Arguments

See Also

Examples