Function that reconstructs historical stock trends from fitted qs and all other parameters including MICE components
HistMICE(x, StockPars, FleetPars, np, nf, nareas, maxage, nyears, N, VF,
FretA, maxF = 0.9, MPA, Rel, SexPars, qs, qfrac)Integer, the simulation number
A list of sampled stock parameters, one list element per stock
A hierarcical list of sampled fleet parameters, first list level is stock, second is fleet
The number of stocks
The number of fleets
The number of areas
The maximum number of modelled ages
The number of historical 'spool-up' years (from unfished to now)
An array of stock numbers [nsim,np,maxage,nyears,nareas] - only the values from the first year are used
An array of vulnerability [nsim,np,nf,maxage,nyears+proyears]
An array of retention [nsim,np,nf,maxage,nyears+proyears]
A numeric value specifying the maximum fishing mortality for any single age class
An of spatial closures by year [np,nf,nyears+proyears,nareas]
A list of inter-stock relationships see slot Rel of MOM object class
A list of sex-specific relationships (SSBfrom, stock_age)
A list of stock-specific fleet fractions of current catch list[[stock]][nsim, nf]
Bounds for total q estimation