Completes a single iteration of recruitment, mortality, fishing and movement given MICE model inputs
popdynOneMICE(np, nf, nareas, maxage, Ncur, Vcur, FMretx, FMx, PerrYrp,
hsx, aRx, bRx, movy, Spat_targ, SRrelx, M_agecur, Mat_agecur, Asizex, Kx,
Linfx, t0x, Mx, R0x, R0ax, SSBpRx, ax, bx, Rel, SexPars, x)Integer, the number of stocks
Integer, number of fleets
Integer, maximum modelled age
Array [stock, age, area] of stock numbers
Array [fleet, age, area] of the vulnerability curve
Array [stock, fleet, age, area] of the retention curve
Array [stock, fleet, age, area] fishing mortality rate
Vector [stock] process error - the lognormal factor for recruitment strength
Vector [stock] steepness of the stock recruitment curve
Vector [stock] stock recruitment parameter alpha (for Ricker curve)
Vector [stock] stock recruitment parameter beta (for Ricker curve)
Array [stock,age,area,area] of movement transitions
Matrix [stock, fleet] of spatial targetting parameter (0 evenly spatial distributed, 1 proportional to vulnerable biomass)
Integer vector [stock] the form of the stock recruitment relationship (1 = Beverton-Holt, 2= Ricker)
Matrix [stock, age] of Natural mortality rate at age
Matrix [stock, age] of maturity (spawning fraction) age age
Matrix [stock, area] of relative area sizes
Vector [stock] of von B growth parameter K
Vector [stock] mature natural mortality rate
Vector [stock] unfished recruitment
Matrix [stock, area] unfished recruitment by area
Matrix [stock, area] spawning biomass per recruit by area
Vector [stock] weight-length parameter a W=aL^b
Vector [stock] weight-length parameter b W=aL^b
A list of inter-stock relationships see slot Rel of MOM object class
A list of sex-specific relationships (SSBfrom, stock_age)
Integer. The simulation number
Integer, number of historical years (unfished til today)
Vector [stock] of von B asymptotic length parameter Linf
Vector [stock] of von B theoretical age at zero length (t0)