Completes a single iteration of recruitment, mortality, fishing and movement given MICE model inputs
popdynOneMICE(
np,
nf,
nareas,
maxage,
Ncur,
Vcur,
FMretx,
FMx,
PerrYrp,
hsx,
aRx,
bRx,
movy,
Spat_targ,
SRrelx,
M_agecur,
Mat_agecur,
Asizex,
Kx,
Linfx,
t0x,
Mx,
R0x,
R0ax,
SSBpRx,
ax,
bx,
Rel,
SexPars,
x
)Integer, the number of stocks
Integer, number of fleets
Integer, maximum modelled age
Array [stock, age, area] of stock numbers
Array [fleet, age, area] of the vulnerability curve
Array [stock, fleet, age, area] of the retention curve
Array [stock, fleet, age, area] fishing mortality rate
Vector [stock] process error - the lognormal factor for recruitment strength
Vector [stock] steepness of the stock recruitment curve
Vector [stock] stock recruitment parameter alpha (for Ricker curve)
Vector [stock] stock recruitment parameter beta (for Ricker curve)
Array [stock,age,area,area] of movement transitions
Matrix [stock, fleet] of spatial targetting parameter (0 evenly spatial distributed, 1 proportional to vulnerable biomass)
Integer vector [stock] the form of the stock recruitment relationship (1 = Beverton-Holt, 2= Ricker)
Matrix [stock, age] of Natural mortality rate at age
Matrix [stock, age] of maturity (spawning fraction) age age
Matrix [stock, area] of relative area sizes
Vector [stock] of von B growth parameter K
Vector [stock] mature natural mortality rate
Vector [stock] unfished recruitment
Matrix [stock, area] unfished recruitment by area
Matrix [stock, area] spawning biomass per recruit by area
Vector [stock] weight-length parameter a W=aL^b
Vector [stock] weight-length parameter b W=aL^b
A list of inter-stock relationships see slot Rel of MOM object class
A list of sex-specific relationships (SSBfrom, stock_age)
Integer. The simulation number
Integer, number of historical years (unfished til today)
Vector [stock] of von B asymptotic length parameter Linf
Vector [stock] of von B theoretical age at zero length (t0)