SS2DataMOM

A function that uses the file location of a fitted SS3 model including input files to population
the various slots of an Data object.

Development, simulation testing, and implementation of management procedures for fisheries
(see Carruthers & Hordyk (2018) <doi:10.1111/2041-210X.13081>).

Adrian Hordyk

MSEtool

Management Strategy Evaluation Toolkit

Quang Huynh

Tom Carruthers

Chris Grandin

SS2DataMOM function

<dl><dt>SSdir</dt>
<dd>A folder with Stock Synthesis input and output files in it. Alternatively,</dd>
<dt>age_M</dt>
<dd>A vector of ages to average across to calculate a single value of natural mortality.
Currently, the Data object supports a single value of M for all ages. By default, <code>NULL</code> averages over all ages.</dd>
<dt>comp_partition</dt>
<dd>Integer vector for selecting length/age observations that are retained (2), discarded (1), or both (0). By default, only retained
comps are used. If multiple codes are used, then comp matrix is the sum over all codes.</dd>
<dt>silent</dt>
<dd>Logical. Suppress messages?</dd>
<dt>...</dt>
<dd>Arguments to pass to SS_output</dd></dl>

Arguments

Author

Reads data Stock Synthesis file structure into a nested Data object analogous with multiMSE — SS2DataMOM

<dl>

<dt>SSdir</dt>
<dd>A folder with Stock Synthesis input and output files in it. Alternatively,</dd>


<dt>age_M</dt>
<dd>A vector of ages to average across to calculate a single value of natural mortality.
Currently, the Data object supports a single value of M for all ages. By default, <code>NULL</code> averages over all ages.</dd>


<dt>comp_partition</dt>
<dd>Integer vector for selecting length/age observations that are retained (2), discarded (1), or both (0). By default, only retained
comps are used. If multiple codes are used, then comp matrix is the sum over all codes.</dd>


<dt>silent</dt>
<dd>Logical. Suppress messages?</dd>


<dt>...</dt>
<dd>Arguments to pass to SS_output</dd>

</dl>

SS2DataMOM: Reads data Stock Synthesis file structure into a nested Data object analogous with multiMSE

Description

Usage

Value

Arguments

Author

See Also