viewVolcano

result

which groups you want to compare, i.e. c("WT", "Treat1"), only two groups are allowed

compare_group

select fold change values, default = 2

Common mass spectrometry tools described in John Roboz (2013) <doi:10.1201/b15436>. It allows checking element
isotopes, calculating (isotope labelled) exact monoisitopic mass, m/z values and mass accuracy, and inspecting possible contaminant mass peaks,
examining possible adducts in electrospray ionization (ESI) and matrix-assisted laser desorption ionization (MALDI)
ion sources.

Yonghui Dong

MSbox

Mass Spectrometry Tools

viewVolcano function

<dl><dt>result</dt>
<dd>result from doStat() function</dd>
<dt>compare_group</dt>
<dd>which groups you want to compare, i.e. c("WT", "Treat1"), only two groups are allowed</dd>
<dt>FC</dt>
<dd>select fold change values, default = 2</dd>
<dt>p</dt>
<dd>select p value, default = 0.05</dd></dl>

Arguments

Author

View volcano plot — viewVolcano

<dl>

<dt>result</dt>
<dd>result from doStat() function</dd>


<dt>compare_group</dt>
<dd>which groups you want to compare, i.e. c("WT", "Treat1"), only two groups are allowed</dd>


<dt>FC</dt>
<dd>select fold change values, default = 2</dd>


<dt>p</dt>
<dd>select p value, default = 0.05</dd>

</dl>

viewVolcano: View volcano plot

Description

Usage

Arguments

Author

Examples