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MVR (version 1.00.0)

Mean-Variance Regularization

Description

MVR is a non-parametric method for joint adaptive mean-variance regularization and variance stabilization of high-dimensional data. It is suited for handling difficult problems posed by high-dimensional multivariate datasets (p >> n paradigm), such as in omics-type data, among which are that the variance is often a function of the mean, variable-specific estimators of variances are not reliable, and tests statistics have low powers due to a lack of degrees of freedom. Key features include (i) Normalization and/or variance stabilization of the data, (ii) Computation of mean-variance-regularized t- and F-statistics, (iii) Generation of diverse diagnostic plots, (iv) Computationally efficiency implementation, using C++ interfacing, and an option for parallel computing to enjoy a fast and easy experience in the R environment.

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Version

Install

install.packages('MVR')

Monthly Downloads

195

Version

1.00.0

License

GPL (>= 3)

Maintainer

Jean-Eudes Dazard

Last Published

July 26th, 2011

Functions in MVR (1.00.0)

withinsumsq

Within-Cluster Sum of Squares Distances Subroutine
merging.cluster

Variable-Cluster Configuration Merging Subroutine
MVR.news

Function to Display the NEWS File
mvrt.test

Function for Computing Mean-Variance Regularized T-test Statistic and Its Significance
mvr

Function for Mean-Variance Regularization and Variance Stabilization
MVR-package

Mean-Variance Regularization Package
Synthetic

Multi-Groups Synthetic Dataset
normalization.diagnostic

Function for Plotting Summary Normalization Diagnostic Plots
sim.dis

Similarity Statistic Subroutine
pooled.sd

Pooled Group Sample Standard Deviation Subroutine
is.empty

Checks if Object is Empty
mvrt

Mean-Variance Regularized t-Test Statistic Subroutine
km.clustering

Wrapper Subroutine Around C Subroutine for 'K-means' Clustering Algorithm
is.valid

Validation Subroutine to Test the Bootstrap Set of Indices
MeanVarReg

Mean-Variance Regularization Core Subroutine
pooled.mean

Pooled Group Sample Mean Subroutine
cluster.diagnostic

Function for Plotting Summary Cluster Diagnostic Plots
Real

Real Proteomics Dataset
target.diagnostic

Function for Plotting Summary Target Moments Diagnostic Plots
stabilization.diagnostic

Function for Plotting Summary Variance Stabilization Diagnostic Plots