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MVR (version 1.30.3)

Mean-Variance Regularization

Description

This is a non-parametric method for joint adaptive mean-variance regularization and variance stabilization of high-dimensional data. It is suited for handling difficult problems posed by high-dimensional multivariate datasets (p >> n paradigm). Among those are that the variance is often a function of the mean, variable-specific estimators of variances are not reliable, and tests statistics have low powers due to a lack of degrees of freedom. Key features include: (i) Normalization and/or variance stabilization of the data, (ii) Computation of mean-variance-regularized t-statistics (F-statistics to follow), (iii) Generation of diverse diagnostic plots, (iv) Computationally efficient implementation using C/C++ interfacing and an option for parallel computing to enjoy a faster and easier experience in the R environment.

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Install

install.packages('MVR')

Monthly Downloads

188

Version

1.30.3

License

GPL (>= 3) | file LICENSE

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Maintainer

PhD

Last Published

January 28th, 2016

Functions in MVR (1.30.3)

normalization.diagnostic

Function for Plotting Summary Normalization Diagnostic Plots
MVR.news

Function to Display the NEWS File
Real

Real Proteomics Dataset
MVR-package

Mean-Variance Regularization Package
stabilization.diagnostic

Function for Plotting Summary Variance Stabilization Diagnostic Plots
Synthetic

Multi-Groups Synthetic Dataset
cluster.diagnostic

Function for Plotting Summary Cluster Diagnostic Plots
mvrt.test

Function for Computing Mean-Variance Regularized T-test Statistic and Its Significance
target.diagnostic

Function for Plotting Summary Target Moments Diagnostic Plots
mvr

Function for Mean-Variance Regularization and Variance Stabilization