mi_unify_mod

Predict with four models and unify results by the sub-model's specificity score to the four possible classes.

The number of biological databases is growing rapidly, but different databases use different IDs to refer to the same biological entity. The inconsistency in IDs impedes the integration of various types of biological data. To resolve the problem, we developed 'MantaID', a data-driven, machine-learning based approach that automates identifying IDs on a large scale. The 'MantaID' model's prediction accuracy was proven to be 99%, and it correctly and effectively predicted 100,000 ID entries within two minutes. 'MantaID' supports the discovery and exploitation of ID patterns from large quantities of databases. (e.g., up to 542 biological databases). An easy-to-use freely available open-source software R package, a user-friendly web application, and API were also developed for 'MantaID' to improve applicability. To our knowledge, 'MantaID' is the first tool that enables an automatic, quick, accurate, and comprehensive identification of large quantities of IDs, and can therefore be used as a starting point to facilitate the complex assimilation and aggregation of biological data across diverse databases.

Zeng Zhengpeng

MantaID

A Machine-Learning Based Tool to Automate the Identification of
Biological Database IDs

Zhengpeng Zeng

Longfei Mao

Feng Yu

Jiamin Hu

Xiting Wang

mi_unify_mod function

<dl><dt>data</dt>
<dd>A dataframe contains the ID column.</dd>
<dt>col_id</dt>
<dd>The name of ID column.</dd>
<dt>result_rg</dt>
<dd>The result from the Random Forest model.</dd>
<dt>result_rp</dt>
<dd>The result from the Decision Tree model.</dd>
<dt>result_xgb</dt>
<dd>The result from the XGBoost model.</dd>
<dt>result_BP</dt>
<dd>The result from the Backpropagation Neural Network model.</dd>
<dt>c_value</dt>
<dd>A numeric value used in the final prediction calculation.</dd>
<dt>pad_len</dt>
<dd>The length to pad the ID characters to.</dd></dl>

Arguments

Predict with four models and unify results by the sub-model's specificity score to the four possible classes. — mi_unify_mod

<dl>

<dt>data</dt>
<dd>A dataframe contains the ID column.</dd>


<dt>col_id</dt>
<dd>The name of ID column.</dd>


<dt>result_rg</dt>
<dd>The result from the Random Forest model.</dd>


<dt>result_rp</dt>
<dd>The result from the Decision Tree model.</dd>


<dt>result_xgb</dt>
<dd>The result from the XGBoost model.</dd>


<dt>result_BP</dt>
<dd>The result from the Backpropagation Neural Network model.</dd>


<dt>c_value</dt>
<dd>A numeric value used in the final prediction calculation.</dd>


<dt>pad_len</dt>
<dd>The length to pad the ID characters to.</dd>

</dl>

mi_unify_mod: Predict with four models and unify results by the sub-model's specificity score to the four possible classes.

Description

Usage

Value

Arguments