MapperPlotter

Visualizes the Mapper output using either networkD3.

The Mapper algorithm from Topological Data Analysis, the steps are as follows 1. Define a filter (lens) function on the data. 2. Perform clustering within each level set. 3. Generate a complex from the clustering results.

ChiChien Wang

MapperAlgo

Topological Data Analysis: Mapper Algorithm

Paul Pearson

Daniel Muellner

Gurjeet Singh

MapperPlotter function

<dl><dt>Mapper</dt>
<dd>Mapper object.</dd>
<dt>original_data</dt>
<dd>Original dataframe, not the filter values.</dd>
<dt>label</dt>
<dd>Label of the data.</dd>
<dt>avg</dt>
<dd>Whether coloring the nodes by average label or majority label.</dd>
<dt>use_embedding</dt>
<dd>Whether to use original data for coloring (TRUE or FALSE).</dd></dl>

Arguments

Plot Mapper Result — MapperPlotter

<dl>

<dt>Mapper</dt>
<dd>Mapper object.</dd>


<dt>original_data</dt>
<dd>Original dataframe, not the filter values.</dd>


<dt>label</dt>
<dd>Label of the data.</dd>


<dt>avg</dt>
<dd>Whether coloring the nodes by average label or majority label.</dd>


<dt>use_embedding</dt>
<dd>Whether to use original data for coloring (TRUE or FALSE).</dd>

</dl>

MapperPlotter: Plot Mapper Result

Description

Usage

Value

Arguments