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MareyMap (version 1.2)
Estimation of meiotic recombination rates using marey maps.
Description
A package to graphically estimate local recombination rates across a genome using marey maps.
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1.2
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Install
install.packages('MareyMap')
Monthly Downloads
394
Version
1.2
License
GPL (>= 2)
Maintainer
Aurélie Siberchicot
Last Published
October 7th, 2014
Functions in MareyMap (1.2)
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MapCollection-methods
Constructor for class MapCollection
MMSlidingWindow-class
Class "MMSlidingWindow" Interpolation method plug-in for MareyMap
Drosophila_melanogaster
The marey map for the species Drosophila melanogaster
Caenorhabditis_elegans
The marey map for the species Caenorhabditis_elegans
MapCollection-class
Class "MapCollection"
Homo_sapiens
The marey map for the species Homo sapiens (female, male and mean of the two)
MMLoess-class
Class "MMLoess". Interpolation method plug-in for MareyMap
markerNames-methods
Accessors for the class markerNames.
MMSpline3-class
Class "MMSpline3" Interpolation using cubic splines
InterpolationParam-class
Class "InterpolationParam"
plotModels-methods
plotModels
InterpolationParam-methods
Methods for Function InterpolationParam in Package 'MareyMap'
name-methods
Accessor for slot name.
registerInterpolationMethod-methods
registerInterpolationMethods
paramFun-methods
accessors for the slot paramFun
validPositions-methods
validPositions
markerValidity-methods
accessors for slot markerValidity
color-methods
Accessors for slot color in package 'MareyMap'
plotModel-methods
plotModel
plotMarkers-methods
plotMarkers
paramDesc-methods
Accessors for the slot paramDesc
setName-methods
Accessors for the slot setName.
mapNames-methods
mapNames
removeMarker-methods
removeMarker
paramMax-methods
Accessors for the slot paramMax.
interpolations-methods
accessors for slot interpolations
textFile-methods
textFile
geneticDistances-methods
Accessors for slot geneticDistances
paramDefault-methods
Accessors for slot paramDefault
argList-methods
Methods for function argList in package 'MareyMap'
interpolate-methods
interpolate
paramMin-methods
Accessors for slot paramMin.
setNames-methods
setNames
userParam-methods
userParam
MareyMap-methods
Constructor for object of the class MareyMap.
visible-methods
Accessors for the slot visible
createOrder-methods
createOrder
paramValues-methods
Accessor for the slot paramValues.
plotRate-methods
plotRate
startMareyMapGUI-methods
MareyMapGUI launcher
MapSet-methods
Constructor for the class MapSet.
rates-methods
Accessors for the slot rates
paramType-methods
Accessors for the slot paramType.
mapName-methods
accessors for the slot mapName
plotRates-methods
plotRates
MapSet-class
Class "MapSet"
physicalPositions-methods
Accessors for the slot physicalPositions
interpolation-methods
set or returns an interpolation.
MareyMap-class
Class "MareyMap"
Arabidopsis_thalianan
The marey map for the species Arabidopsis thalianan
Interpolation-class
Class "Interpolation"
persistent-methods
Accessors for the slot persistent.
query-methods
Methods for Function query
paramName-methods
Accessors for the slot paramName.
getInterList-methods
returns a list of interpolation methods.