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MareyMap (version 1.3.0)
Estimation of Meiotic Recombination Rates Using Marey Maps
Description
Local recombination rates are graphically estimated across a genome using marey maps.
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Install
install.packages('MareyMap')
Monthly Downloads
395
Version
1.3.0
License
GPL (>= 2)
Maintainer
Aurélie Siberchicot
Last Published
July 8th, 2015
Functions in MareyMap (1.3.0)
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MareyMap-methods
Constructor for object of the class MareyMap.
Homo_sapiens
The marey map for the species Homo sapiens (female, male and mean of the two)
mapNames-methods
mapNames
name-methods
Accessor for slot name.
MapCollection-methods
Constructor for class MapCollection
getInterList-methods
returns a list of interpolation methods.
color-methods
Accessors for slot color in package 'MareyMap'
InterpolationParam-methods
Methods for Function InterpolationParam in Package 'MareyMap'
startMareyMapGUI-methods
MareyMapGUI launcher
Drosophila_melanogaster
The marey map for the species Drosophila melanogaster
MapSet-methods
Constructor for the class MapSet.
createOrder-methods
createOrder
plotModel-methods
plotModel
physicalPositions-methods
Accessors for the slot physicalPositions
paramDefault-methods
Accessors for slot paramDefault
setName-methods
Accessors for the slot setName.
MapCollection-class
Class "MapCollection"
MMSlidingWindow-class
Class "MMSlidingWindow" Interpolation method plug-in for MareyMap
MMLoess-class
Class "MMLoess". Interpolation method plug-in for MareyMap
Arabidopsis_thaliana
The marey map for the species Arabidopsis thaliana
InterpolationParam-class
Class "InterpolationParam"
paramDesc-methods
Accessors for the slot paramDesc
MMSpline3-class
Class "MMSpline3" Interpolation using cubic splines
Caenorhabditis_elegans
The marey map for the species Caenorhabditis_elegans
persistent-methods
Accessors for the slot persistent.
geneticDistances-methods
Accessors for slot geneticDistances
removeMarker-methods
removeMarker
plotMarkers-methods
plotMarkers
MapSet-class
Class "MapSet"
validPositions-methods
validPositions
query-methods
Methods for Function query
paramMax-methods
Accessors for the slot paramMax.
plotModels-methods
plotModels
plotRate-methods
plotRate
interpolation-methods
set or returns an interpolation.
interpolate-methods
interpolate
interpolations-methods
accessors for slot interpolations
markerValidity-methods
accessors for slot markerValidity
Interpolation-class
Class "Interpolation"
mapName-methods
accessors for the slot mapName
textFile-methods
textFile
MareyMap-class
Class "MareyMap"
markerNames-methods
Accessors for the class markerNames.
rates-methods
Accessors for the slot rates
paramMin-methods
Accessors for slot paramMin.
paramValues-methods
Accessor for the slot paramValues.
visible-methods
Accessors for the slot visible
registerInterpolationMethod-methods
registerInterpolationMethods
paramName-methods
Accessors for the slot paramName.
plotRates-methods
plotRates
argList-methods
Methods for function argList in package 'MareyMap'
paramFun-methods
accessors for the slot paramFun
userParam-methods
userParam
setNames-methods
setNames
paramType-methods
Accessors for the slot paramType.