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MareyMap (version 1.3.1)
Estimation of Meiotic Recombination Rates Using Marey Maps
Description
Local recombination rates are graphically estimated across a genome using marey maps.
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Install
install.packages('MareyMap')
Monthly Downloads
394
Version
1.3.1
License
GPL (>= 2)
Maintainer
Aurélie Siberchicot
Last Published
August 24th, 2015
Functions in MareyMap (1.3.1)
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Arabidopsis_thaliana
The marey map for the species Arabidopsis thaliana
Caenorhabditis_elegans
The marey map for the species Caenorhabditis_elegans
MapSet-class
Class "MapSet"
geneticDistances-methods
Accessors for slot geneticDistances
MareyMap-class
Class "MareyMap"
name-methods
Accessor for slot name.
getInterList-methods
returns a list of interpolation methods.
MareyMap-methods
Constructor for object of the class MareyMap.
paramFun-methods
accessors for the slot paramFun
argList-methods
Methods for function argList in package 'MareyMap'
markerValidity-methods
accessors for slot markerValidity
createOrder-methods
createOrder
MapCollection-methods
Constructor for class MapCollection
InterpolationParam-class
Class "InterpolationParam"
persistent-methods
Accessors for the slot persistent.
Homo_sapiens
The marey map for the species Homo sapiens (female, male and mean of the two)
MapCollection-class
Class "MapCollection"
interpolation-methods
set or returns an interpolation.
plotModel-methods
plotModel
plotModels-methods
plotModels
validPositions-methods
validPositions
MMSpline3-class
Class "MMSpline3" Interpolation using cubic splines
MapSet-methods
Constructor for the class MapSet.
MMLoess-class
Class "MMLoess". Interpolation method plug-in for MareyMap
Drosophila_melanogaster
The marey map for the species Drosophila melanogaster
paramValues-methods
Accessor for the slot paramValues.
color-methods
Accessors for slot color in package 'MareyMap'
Interpolation-class
Class "Interpolation"
markerNames-methods
Accessors for the class markerNames.
interpolate-methods
interpolate
registerInterpolationMethod-methods
registerInterpolationMethods
textFile-methods
textFile
rates-methods
Accessors for the slot rates
query-methods
Methods for Function query
setName-methods
Accessors for the slot setName.
MMSlidingWindow-class
Class "MMSlidingWindow" Interpolation method plug-in for MareyMap
userParam-methods
userParam
visible-methods
Accessors for the slot visible
startMareyMapGUI-methods
MareyMapGUI launcher
plotRate-methods
plotRate
setNames-methods
setNames
plotMarkers-methods
plotMarkers
paramDesc-methods
Accessors for the slot paramDesc
removeMarker-methods
removeMarker
mapName-methods
accessors for the slot mapName
physicalPositions-methods
Accessors for the slot physicalPositions
InterpolationParam-methods
Methods for Function InterpolationParam in Package 'MareyMap'
paramDefault-methods
Accessors for slot paramDefault
interpolations-methods
accessors for slot interpolations
mapNames-methods
mapNames
paramMax-methods
Accessors for the slot paramMax.
paramMin-methods
Accessors for slot paramMin.
paramName-methods
Accessors for the slot paramName.
paramType-methods
Accessors for the slot paramType.
plotRates-methods
plotRates