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MareyMap (version 1.3.6)
Estimation of Meiotic Recombination Rates Using Marey Maps
Description
Local recombination rates are graphically estimated across a genome using Marey maps.
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Version
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1.3.3
1.3.1
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1.2
Install
install.packages('MareyMap')
Monthly Downloads
472
Version
1.3.6
License
GPL (>= 2)
Maintainer
Aurélie Siberchicot
Last Published
December 4th, 2020
Functions in MareyMap (1.3.6)
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MMSlidingWindow-class
Class "MMSlidingWindow" Interpolation method plug-in for MareyMap
Caenorhabditis_elegans
The marey map for the species Caenorhabditis_elegans
Interpolation-class
Class "Interpolation"
MMLoess-class
Class "MMLoess". Interpolation method plug-in for MareyMap
Drosophila_melanogaster
The marey map for the species Drosophila melanogaster
InterpolationParam-methods
Methods for Function InterpolationParam in Package 'MareyMap'
InterpolationParam-class
Class "InterpolationParam"
MMSpline3-class
Class "MMSpline3" Interpolation using cubic splines
Arabidopsis_thaliana
The marey map for the species Arabidopsis thaliana
Homo_sapiens
The marey map for the species Homo sapiens (female, male and mean of the two)
MareyMap-class
Class "MareyMap"
MapSet-class
Class "MapSet"
name-methods
Accessor for slot name.
paramDefault-methods
Accessors for slot paramDefault
physicalPositions-methods
Accessors for the slot physicalPositions
MapSet-methods
Constructor for the class MapSet.
MareyMap-methods
Constructor for object of the class MareyMap.
markerValidity-methods
accessors for slot markerValidity
MapCollection-methods
Constructor for class MapCollection
MapCollection-class
Class "MapCollection"
createOrder-methods
createOrder
markerNames-methods
Accessors for the class markerNames.
plotMarkers-methods
plotMarkers
argList-methods
Methods for function argList in package 'MareyMap'
mapName-methods
accessors for the slot mapName
mapNames-methods
mapNames
paramName-methods
Accessors for the slot paramName.
paramDesc-methods
Accessors for the slot paramDesc
color-methods
Accessors for slot color in package 'MareyMap'
plotRate-methods
plotRate
paramFun-methods
accessors for the slot paramFun
geneticDistances-methods
Accessors for slot geneticDistances
interpolate-methods
interpolate
getInterList-methods
returns a list of interpolation methods.
paramMin-methods
Accessors for slot paramMin.
query-methods
Methods for Function query
rates-methods
Accessors for the slot rates
setName-methods
Accessors for the slot setName.
paramMax-methods
Accessors for the slot paramMax.
interpolation-methods
set or returns an interpolation.
startMareyMapGUI-methods
MareyMapGUI launcher
plotModel-methods
plotModel
registerInterpolationMethod-methods
registerInterpolationMethods
paramType-methods
Accessors for the slot paramType.
interpolations-methods
accessors for slot interpolations
plotRates-methods
plotRates
persistent-methods
Accessors for the slot persistent.
paramValues-methods
Accessor for the slot paramValues.
textFile-methods
textFile
userParam-methods
userParam
validPositions-methods
validPositions
setNames-methods
setNames
plotModels-methods
plotModels
visible-methods
Accessors for the slot visible
removeMarker-methods
removeMarker