isAssayable

 Numerical input corresponding to molecular weight 

Lower limit (in Da) of usable mass window (default: <span class="option">1500</span>)

lower.threshold

Upper limit (in Da) of usable mass window (default: <span class="option">7000</span>)

upper.threshold


  Function to determine whether or not a given molecular weight is assayable (i.e. within the usable mass window specified)


 logic 

This package is designed for the import, quality control, analysis, and visualization of methylation data generated using Sequenom's MassArray platform.  The tools herein contain a highly detailed amplicon prediction for optimal assay design.  Also included are quality control measures of data, such as primer dimer and bisulfite conversion efficiency estimation.  Methylation data are calculated using the same algorithms contained in the EpiTyper software package.  Additionally, automatic SNP-detection can be used to flag potentially confounded data from specific CG sites.  Visualization includes barplots of methylation data as well as UCSC Genome Browser-compatible BED tracks.  Multiple assays can be positionally combined for integrated analysis.

Reid F Thompson

MassArray

Analytical Tools for MassArray Data

isAssayable function

Numerical input corresponding to molecular weight

Lower limit (in Da) of usable mass window (default: <option>1500</option>)

Upper limit (in Da) of usable mass window (default: <option>7000</option>)

Function to determine whether or not a given molecular weight is assayable (i.e. within the usable mass window specified)

isAssayable: Is assayable?

Description

Usage

Arguments

Value

Examples