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2.57
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Install
install.packages('MasterBayes')
Monthly Downloads
844
Version
2.57
License
GPL (>= 2)
Maintainer
Jarrod Hadfield
Last Published
June 24th, 2020
Functions in MasterBayes (2.57)
Search functions
GdataPed
GdataPed Object
PdataPed
PdataPed Object
MLE.ped
Maximum Likelihood Estimation of the Pedigree
MLE.popsize
Maximum Likelihood Estimation of the Unsampled Population Size
extractA
Allele Frequencies
mismatches
Parent-Offspring Genotype Mismatches
orderPed
Orders a Pedigree
legalG
Legal Genotype Configurations
beta.loglik
Log-Likelihood of Beta
genotype.list
Genotype Objects for all Loci
popsize.loglik
Log-Likelihood of Unsampled Population Size
fillX.G
Mendelian Transition Probabilities
genotypeD
genotypeD Object
reordXlist
Reorders Design Matrices
autocorrP
Autocorrelation Function for Parenatge Assignment
summary.genotypeD
genotypeD Object
modeG
Posterior Mode of Genotypes
consensusG
Obtains a consensus genotype from duplicate samples
simgenotypes
Genotype and Genotyping Error Simulation
tunePed
tunePed Object
simpedigree
Simulates a Pedigree given a Log-Linear Model
getXlist
Design Matrices for the Multinomial Log-Linear Model
startPed
startPed Object
insertPed
Inserts Founders into a Pedigree
modeP
Posterior Mode of Parents
post.pairs
Returns pairs of individuals that fall into specific relatedness categories
varPed
Transforms Variables for a Multinomial Log-Linear Model
priorPed
priorPed Object
WarblerG
Seychelles Warbler Genotypes
WarblerP
Seychelles Warbler Phenotypes
MCMCped
Markov chain Monte Carlo Methods for Pedigree Reconstruction and Analysis
MLE.beta
Maximum Likelihood Estimation of Beta
MasterBayes
Maximum Likelihood and Markov chain Monte Carlo methods for Pedigree Reconstruction, Analysis and Simulation.