MatrixEQTL (version 1.2.0)
Matrix eQTL: Ultra fast eQTL analysis via large matrix
operations
Description
Matrix eQTL is designed for fast eQTL analysis on large
datasets. Matrix eQTL can test for association between
genotype and gene expression using both linear regression and
ANOVA models. The models can include covariates to account for
such factors as population structure, gender, and clinical
variables. It also supports models with heteroscedastic and/or
correlated errors, false discovery rate estimation and separate
treatment of local (cis) and distant (trans) eQTLs.