MatrixeQTL-package: Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
Description
Matrix eQTL is designed for fast eQTL analysis of large datasets.
Matrix eQTL can test for association between genotype and gene expression using linear regression
with either additive or ANOVA genotype effects.
The models can include covariates to account for factors
as population stratification, gender, and clinical variables.
It also supports models with heteroscedastic and/or correlated errors,
false discovery rate estimation and separate treatment of local (cis) and distant (trans) eQTLs.Details
ll{
Package: MatrixeQTL
Type: Package
Version: 1.5.0
Date: 2012-02-05
License: LGPL-3
LazyLoad: yes
Depends: methods
}References
The software website:
http://www.bios.unc.edu/research/genomic_software/Matrix_eQTL/