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MatrixRider (version 1.4.0)

Obtain total affinity and occupancies for binding site matrices on a given sequence

Description

Calculates a single number for a whole sequence that reflects the propensity of a DNA binding protein to interact with it. The DNA binding protein has to be described with a PFM matrix, for example gotten from Jaspar.

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Version

Version

1.4.0

License

GPL-3

Maintainer

Elena Grassi

Last Published

February 15th, 2017

Functions in MatrixRider (1.4.0)

getSeqOccupancy

Computes the total affinity or the occupancy at a given cutoff
MatrixRider-package

Calculate total affinity and occupancies for binding site matrices on a given sequence