Mega2R (version 1.0.6)

init_pedgene: load Mega2 SQLite database and perform initialization for pedgene usage

Description

This populates the R data frames from the specified Mega2 SQLite database.

Usage

init_pedgene(db = NULL, verbose = FALSE, traitname = "default", ...)

Arguments

db

specifies the path of a Mega2 SQLite database containing study data.

verbose

TRUE indicates that diagnostic printouts should be enabled. This value is saved in the returned environment.

traitname

Name of the affection status trait to use to set the case/control status; default value = "default".

...

fed to dbmega2_import(); should be bpPosMap= to select from the maps of base pairs, if the default is not desired.

Value

"environment" containing data frames from an SQLite database and some computed values.

See Also

DOpedgene, Mega2pedgene, mkfam

Examples

# NOT RUN {
db = system.file("exdata", "seqsimm.db", package="Mega2R")
ENV = init_pedgene(db, traitname = "default")
ls(ENV)

# }