metalyzer_se <- MetAlyzer_dataset(file_path = example_mutation_data_xl())
metalyzer_se <- filterMetabolites(
metalyzer_se,
drop_metabolites = "Metabolism Indicators"
)
metalyzer_se <- renameMetaData(
metalyzer_se,
Mutant_Control = "Sample Description"
)
metalyzer_se <- calculate_log2FC(
metalyzer_se,
categorical = "Mutant_Control",
impute_perc_of_min = 0.2,
impute_NA = TRUE
)
log2FC(metalyzer_se)
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