merge_edge_counts

<p>A named list of assignments (the list element's name will be used as a
resulting data frame column name).</p>

assignments

<p>Merges two or more EDGE-like taxonomical assignments. The input data frames are assumed to
have the following columns: LEVEL, TAXA, and COUNT -- these will be used in the merge
procedure, all other columns will be ignored.</p>

Implements routines for metagenome sample taxonomy assignments collection,
aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2,
BWA, Kraken, MetaPhlAn, DIAMOND, and Pangia. Produces SVG and PDF heatmap-like plots
comparing taxa abundances across projects.

Pavel Senin

MetaComp

EDGE Taxonomy Assignments Visualization

merge_edge_counts function

Merges two or more EDGE-like taxonomical assignments. The input data frames are assumed to
have the following columns: LEVEL, TAXA, and COUNT -- these will be used in the merge
procedure, all other columns will be ignored. — merge_edge_counts

Merges two or more EDGE-like taxonomical assignments. The input data frames are assumed to
have the following columns: LEVEL, TAXA, and COUNT -- these will be used in the merge
procedure, all other columns will be ignored.

merge_edge_counts: Merges two or more EDGE-like taxonomical assignments. The input data frames are assumed to have the following columns: LEVEL, TAXA, and COUNT -- these will be used in the merge procedure, all other columns will be ignored.

Description

Usage

Arguments

Value