MetaDBparse (version 2.0.0)

build.WIKIPATHWAYS: Build WikiPathways

Description

Parses WikiPathways chemical compound database, returns data table with columns compoundname, description, charge, formula and structure (in SMILES)

Usage

build.WIKIPATHWAYS(outfolder, testMode = FALSE)

Arguments

outfolder

Which folder to save temp files to?

testMode

run in test mode? Only parses first ten compounds

Value

data table with parsed database

See Also

SPARQL as.data.table getURL html_nodes read_html

Examples

# NOT RUN {
build.WIKIPATHWAYS(outfolder=tempdir(), testMode=TRUE)
# }