MetaDE v1.0.5
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by Xingbin Wang
MetaDE: Microarray meta-analysis for differentially expressed gene detection
MetaDE package implements 12 major meta-analysis methods
for differential expression analysis.
Functions in MetaDE
Name | Description | |
MetaDE.pvalue | Identify differentially expressed genes by combining p-values | |
MetaDE.merge | Merge microarray data sets | |
ind.cal.ES | Calculate the effect sizes | |
MetaDE.ES | Identify differentially expressed genes by combining effect sizes | |
count.DEnumber | Count the number of differentially expressed (DE) genes | |
MetaDE-package | MetaDE: Microarray meta-analysis for differentially expressed gene detection | |
MetaDE.match | Match the probeIds to gene symbol | |
MetaDE.Read | Read data sets into R | |
heatmap.sig.genes | A function to plot the heatmap of DE genes detectred at a given FDR threshold from the Meta-analysis. | |
MetaDE.minMCC | Identify differentially expressed genes by integrating multiple studies(datasets) using minMCC approach | |
MetaDE.rawdata | Identify differentially expressed genes by integrating multiple studies(datasets) | |
ind.analysis | Identify differentially expressed genes in each individual dataset | |
draw.DEnumber | A function to plot the number of DE genes against FDR obtained from the Meta-analysis. | |
MetaDE.filter | A function to filter genes | |
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Details
Type | Package |
Date | 2012-05-16 |
License | GPL-2 |
LazyLoad | yes |
Packaged | 2012-08-10 11:13:50 UTC; Xingbin |
Repository | CRAN |
Date/Publication | 2012-08-10 16:11:23 |
depends | Biobase , combinat , impute , survival , tools |
Contributors | Jia Li, Xingbin Wang, George Tseng |
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[](http://www.rdocumentation.org/packages/MetaDE)