MetaDE v1.0.5
0
Monthly downloads
by Xingbin Wang
MetaDE: Microarray meta-analysis for differentially expressed gene detection
MetaDE package implements 12 major meta-analysis methods
for differential expression analysis.
Functions in MetaDE
| Name | Description | |
| MetaDE.pvalue | Identify differentially expressed genes by combining p-values | |
| MetaDE.merge | Merge microarray data sets | |
| ind.cal.ES | Calculate the effect sizes | |
| MetaDE.ES | Identify differentially expressed genes by combining effect sizes | |
| count.DEnumber | Count the number of differentially expressed (DE) genes | |
| MetaDE-package | MetaDE: Microarray meta-analysis for differentially expressed gene detection | |
| MetaDE.match | Match the probeIds to gene symbol | |
| MetaDE.Read | Read data sets into R | |
| heatmap.sig.genes | A function to plot the heatmap of DE genes detectred at a given FDR threshold from the Meta-analysis. | |
| MetaDE.minMCC | Identify differentially expressed genes by integrating multiple studies(datasets) using minMCC approach | |
| MetaDE.rawdata | Identify differentially expressed genes by integrating multiple studies(datasets) | |
| ind.analysis | Identify differentially expressed genes in each individual dataset | |
| draw.DEnumber | A function to plot the number of DE genes against FDR obtained from the Meta-analysis. | |
| MetaDE.filter | A function to filter genes | |
| No Results! | ||
Last month downloads
Details
| Type | Package |
| Date | 2012-05-16 |
| License | GPL-2 |
| LazyLoad | yes |
| Packaged | 2012-08-10 11:13:50 UTC; Xingbin |
| Repository | CRAN |
| Date/Publication | 2012-08-10 16:11:23 |
| depends | Biobase , combinat , impute , survival , tools |
| Contributors | Jia Li, Xingbin Wang, George Tseng |
Include our badge in your README
[](http://www.rdocumentation.org/packages/MetaDE)