MetaDE v1.0.5

0

Monthly downloads

0th

Percentile

by Xingbin Wang

MetaDE: Microarray meta-analysis for differentially expressed gene detection

MetaDE package implements 12 major meta-analysis methods for differential expression analysis.

Functions in MetaDE

Name Description
MetaDE.pvalue Identify differentially expressed genes by combining p-values
MetaDE.merge Merge microarray data sets
ind.cal.ES Calculate the effect sizes
MetaDE.ES Identify differentially expressed genes by combining effect sizes
count.DEnumber Count the number of differentially expressed (DE) genes
MetaDE-package MetaDE: Microarray meta-analysis for differentially expressed gene detection
MetaDE.match Match the probeIds to gene symbol
MetaDE.Read Read data sets into R
heatmap.sig.genes A function to plot the heatmap of DE genes detectred at a given FDR threshold from the Meta-analysis.
MetaDE.minMCC Identify differentially expressed genes by integrating multiple studies(datasets) using minMCC approach
MetaDE.rawdata Identify differentially expressed genes by integrating multiple studies(datasets)
ind.analysis Identify differentially expressed genes in each individual dataset
draw.DEnumber A function to plot the number of DE genes against FDR obtained from the Meta-analysis.
MetaDE.filter A function to filter genes
No Results!

Last month downloads

Details

Type Package
Date 2012-05-16
License GPL-2
LazyLoad yes
Packaged 2012-08-10 11:13:50 UTC; Xingbin
Repository CRAN
Date/Publication 2012-08-10 16:11:23

Include our badge in your README

[![Rdoc](http://www.rdocumentation.org/badges/version/MetaDE)](http://www.rdocumentation.org/packages/MetaDE)