MetaIntegrator (version 2.1.3)

cleanUpPheno: Automatic preprocessing of $pheno dataframe

Description

Takes a Dataset object and:

Usage

cleanUpPheno(myDataset)

Arguments

myDataset

a datasetObject that contains unprocessed $pheno

Value

myDataset a datasetObject that contains processed $pheno and original unprocessed $rawPheno

Examples

# NOT RUN {
# }
# NOT RUN {
# Download and automatically preprocess pheno
gse53195 = getGEOData("GSE53195")
gse53195 = gse53195$originalData$GSE53195
View(gse53195$pheno) # Original $pheno
gse53195 = cleanUpPheno(gse53195)
View(gse53195$rawPheno) # Original $pheno
View(gse53195$pheno) # Preprocessed $Pheno
# }
# NOT RUN {
# }