MetaIntegrator (version 2.1.3)

immunoStatesGenePropCorr: Correct gene expression using cell proportions from immunoStates

Description

Correct gene expression using cell proportions from immunoStates

Usage

immunoStatesGenePropCorr(metaObject)

Arguments

metaObject

a MetaIntegrator formatted Meta object.

Value

Results from immunoStates gene proportion correction on the MetaIntegrator object are stored in $iScorrExp of the original Meta object

Examples

# NOT RUN {
# Example won't work on tinyMetaObject because it requires real gene names
# Download the needed datasets for processing. 
sleData <- getGEOData(c("GSE11909","GSE50635", "GSE39088"))

# Run immunoStates
immunoStatesCorrected <- immunoStateGenePropCorr(sleData)
# }