MetaLandSim (version 0.2)

list.stats: Returning information on a dynamic landscape list

Description

This function allows the computation of some statistics of the sequence of landscapes obtained from simulate.graph. Namely: mean area of the patches, standard deviation of the area, mean pairwise Euclidean distance, total number of patches, species occupation and turnover. It allows the graphical representation of the evolution of these statistics.

Usage

list.stats(sim_list, stat, plotG)

Arguments

sim_list

list from function simulate_graph.

stat

'mean_area', 'sd_area', 'mean_distance', 'n_patches', 'occupation', 'turnover'.

plotG

TRUE/FALSE, plot output.

Value

• Returns a vector with the specified statistics of the list of occupied landscapes. A graphical output is also possible.

See Also

span.graph

Examples

data(rland)
data(landscape_change)
data(param1)

#First, using simulate graph, simulate the occupation on a dynamic landscape 
#(output of span.graph):

sim1 <- simulate_graph(	rl=rland, rlist=landscape_change, simulate.start=TRUE, 
			method='percentage', parm=50, nsew='none', a_min=0, 
			param_df=param1, kern='op1',  conn='op1', colnz='op1', 
			ext='op1', beta1=NULL, b=1, c1=NULL, c2=NULL, z=NULL, R=NULL)

#Then evaluate species occupancy through the changes suffered by the landscape:

occ <- list.stats(sim_list=sim1, stat='occupation', plotG=TRUE)

#Checking the percentage of occupation in the 40 first landscapes:

head(occ,40)

#Output:

#[1] 50.000000 65.000000 90.000000 96.666667 93.333333 91.666667
#[7] 91.666667 90.000000 93.333333 90.000000 85.000000 83.333333
#[13] 85.000000 88.333333 83.333333 86.666667 81.666667 68.333333
#[19] 70.000000 75.000000 80.000000 73.333333 63.333333 56.666667
#[25] 55.000000 51.666667 46.666667 41.666667 38.333333 21.666667
#[31] 13.333333 13.333333 10.000000  6.666667  5.000000  3.389831
#[37]  1.694915  1.694915  0.000000  0.000000