MetaNet (version 0.1.2)

c_net_plot: Plot a metanet

Description

Plot a metanet

Usage

c_net_plot(
  go,
  coors = NULL,
  ...,
  labels_num = 5,
  vertex_size_range = NULL,
  edge_width_range = NULL,
  plot_module = FALSE,
  mark_module = FALSE,
  mark_color = NULL,
  mark_alpha = 0.3,
  module_label = FALSE,
  module_label_cex = 2,
  module_label_color = "black",
  module_label_just = c(0.5, 0.5),
  legend = TRUE,
  legend_number = FALSE,
  legend_cex = 1,
  legend_position = c(left_leg_x = -2, left_leg_y = 1, right_leg_x = 1.2, right_leg_y =
    1),
  group_legend_title = NULL,
  group_legend_order = NULL,
  color_legend = TRUE,
  color_legend_order = NULL,
  size_legend = FALSE,
  size_legend_title = "Node Size",
  edge_legend = TRUE,
  edge_legend_title = "Edge type",
  edge_legend_order = NULL,
  width_legend = FALSE,
  width_legend_title = "Edge width",
  lty_legend = FALSE,
  lty_legend_title = "Edge class",
  lty_legend_order = NULL,
  seed = 1234
)

Value

a network plot

Arguments

go

an igraph or metanet object

coors

the coordinates you saved

...

additional parameters for igraph.plotting

labels_num

show how many labels,>1 indicates number, <1 indicates fraction, "all" indicates all, default:5

vertex_size_range

the vertex size range, e.g. c(1,10)

edge_width_range

the edge width range, e.g. c(1,10)

plot_module

logical, plot module?

mark_module

logical, mark the modules?

mark_color

mark colors

mark_alpha

mark fill alpha, default 0.3

module_label

module_label

module_label_cex

module_label_cex

module_label_color

module_label_color

module_label_just

module_label_just

legend

all legends

legend_number

legend with numbers

legend_cex

character expansion factor relative to current par("cex"), default: 1

legend_position

legend_position, default: c(left_leg_x=-1.9,left_leg_y=1,right_leg_x=1.2,right_leg_y=1)

group_legend_title

group_legend_title, length must same to the numbers of v_group

group_legend_order

group_legend_order vector

color_legend

logical

color_legend_order

color_legend_order vector

size_legend

logical

size_legend_title

size_legend_title

edge_legend

logical

edge_legend_title

edge_legend_title

edge_legend_order

edge_legend_order vector, e.g. c("positive","negative")

width_legend

logical

width_legend_title

width_legend_title

lty_legend

logical

lty_legend_title

lty_legend_title

lty_legend_order

lty_legend_order

seed

random seed, default:1234, make sure each plot is the same.

See Also

Other plot: as.ggig(), input_gephi(), netD3plot(), olympic_rings_net(), plot.ggig(), twocol_edgelist(), venn_net()

Examples

data("c_net")
c_net_plot(co_net)
c_net_plot(co_net2)
c_net_plot(multi1)