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MetaNet (version 0.2.5)

fast_cor: Fast correlation calculation

Description

Fast correlation calculation

Usage

fast_cor(totu, totu2 = NULL, method = c("pearson", "spearman"))

Value

a list with 2 elements:

r

default: spearman correlation

p.value

default: p-value of spearman correlation

Arguments

totu

t(otutab), row are samples, column are features.

totu2

t(otutab) or NULL, row are samples, column are features.

method

"spearman" or "pearson"

See Also

Other calculate: c_net_calculate(), cal_sim(), p.adjust.table(), read_corr()

Examples

Run this code
data("otutab", package = "pcutils")
t(otutab[1:100, ]) -> totu
fast_cor(totu, method = "spearman") -> corr

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