get_group_skeleton

skeleton_plot

Get skeleton network according to a group
Skeleton plot

Comprehensive network analysis package.
Calculate correlation network fastly, accelerate lots of analysis by parallel computing.
Support for multi-omics data, search sub-nets fluently.
Handle bigger data, more than 10,000 nodes in each omics.
Offer various layout method for multi-omics network and some interfaces to other software ('Gephi', 'Cytoscape', 'ggplot2'), easy to visualize.
Provide comprehensive topology indexes calculation, including ecological network stability.

Peng Chen

MetaNet

Network Analysis for Omics Data

get_group_skeleton function

<dl><dt>go</dt>
<dd>network</dd>
<dt>Group</dt>
<dd>vertex column name</dd>
<dt>count</dt>
<dd>take which column count, default: NULL</dd>
<dt>top_N</dt>
<dd>top_N</dd>
<dt>ske_net</dt>
<dd>skeleton</dd>
<dt>split_e_type</dt>
<dd>split by e_type? default: TRUE</dd>
<dt>...</dt>
<dd>additional parameters for <code><a href="/link/igraph.plotting?package=MetaNet&version=0.2.5" data-mini-rdoc="MetaNet::igraph.plotting">igraph.plotting</a></code></dd></dl>

Arguments

Get skeleton network according to a group — get_group_skeleton

<dl>

<dt>go</dt>
<dd>network</dd>


<dt>Group</dt>
<dd>vertex column name</dd>


<dt>count</dt>
<dd>take which column count, default: NULL</dd>


<dt>top_N</dt>
<dd>top_N</dd>


<dt>ske_net</dt>
<dd>skeleton</dd>


<dt>split_e_type</dt>
<dd>split by e_type? default: TRUE</dd>


<dt>...</dt>
<dd>additional parameters for <code><a href='https://rdrr.io/pkg/igraph/man/plot.common.html'>igraph.plotting</a></code></dd>

</dl>

get_group_skeleton: Get skeleton network according to a group

Description

Usage

Value

Arguments

See Also

Examples