c_net_ego

c_net_neighbors

Wrapper around <code><a href="/link/igraph%3A%3Amake_ego_graph()?package=MetaNet&version=0.2.7" data-mini-rdoc="MetaNet::igraph::make_ego_graph()">igraph::make_ego_graph()</a></code> that ensures output retains
"metanet" and "igraph" class structure. Supports single or multiple center nodes.

Comprehensive network analysis package.
Calculate correlation network fastly, accelerate lots of analysis by parallel computing.
Support for multi-omics data, search sub-nets fluently.
Handle bigger data, more than 10,000 nodes in each omics.
Offer various layout method for multi-omics network and some interfaces to other software ('Gephi', 'Cytoscape', 'ggplot2'), easy to visualize.
Provide comprehensive topology indexes calculation, including ecological network stability.

Peng Chen

MetaNet

Network Analysis for Omics Data

c_net_ego function

<dl><dt>graph</dt>
<dd>An igraph object with potential "metanet" class</dd>
<dt>nodes</dt>
<dd>Center node(s) for subnetwork extraction (vertex IDs or names)</dd>
<dt>order</dt>
<dd>Integer specifying the order of neighbors to include</dd>
<dt>mode</dt>
<dd>Character scalar, either "in", "out" or "all" for directed networks</dd></dl>

Arguments

Wrapper around <code><a href='https://rdrr.io/pkg/igraph/man/ego.html'>igraph::make_ego_graph()</a></code> that ensures output retains
"metanet" and "igraph" class structure. Supports single or multiple center nodes.

Extract ego-centric subnetwork with preserved class attributes — c_net_ego

<dl>

<dt>graph</dt>
<dd>An igraph object with potential "metanet" class</dd>


<dt>nodes</dt>
<dd>Center node(s) for subnetwork extraction (vertex IDs or names)</dd>


<dt>order</dt>
<dd>Integer specifying the order of neighbors to include</dd>


<dt>mode</dt>
<dd>Character scalar, either "in", "out" or "all" for directed networks</dd>

</dl>

c_net_ego: Extract ego-centric subnetwork with preserved class attributes

Description

Usage

Value

Arguments

Examples