plot_corr_heatmap

Comprehensive network analysis package.
Calculate correlation network fastly, accelerate lots of analysis by parallel computing.
Support for multi-omics data, search sub-nets fluently.
Handle bigger data, more than 10,000 nodes in each omics.
Offer various layout method for multi-omics network and some interfaces to other software ('Gephi', 'Cytoscape', 'ggplot2'), easy to visualize.
Provide comprehensive topology indexes calculation, including ecological network stability.

Chen Peng

MetaNet

Network Analysis for Omics Data

plot_corr_heatmap function

<dl><dt>corr</dt>
<dd>a corr object, must contain 'r' and 'p.value' matrices.</dd>
<dt>show.p</dt>
<dd>whether to show p-values as significance stars on the heatmap.</dd>
<dt>cluster_rows</dt>
<dd>whether to cluster rows.</dd>
<dt>cluster_cols</dt>
<dd>whether to cluster columns.</dd>
<dt>...</dt>
<dd>additional arguments passed to <code>pheatmap::pheatmap</code>.</dd></dl>

Arguments

Plot a correlation heatmap — plot_corr_heatmap

<dl>

<dt>corr</dt>
<dd>a corr object, must contain 'r' and 'p.value' matrices.</dd>


<dt>show.p</dt>
<dd>whether to show p-values as significance stars on the heatmap.</dd>


<dt>cluster_rows</dt>
<dd>whether to cluster rows.</dd>


<dt>cluster_cols</dt>
<dd>whether to cluster columns.</dd>


<dt>...</dt>
<dd>additional arguments passed to <code>pheatmap::pheatmap</code>.</dd>

</dl>

plot_corr_heatmap: Plot a correlation heatmap

Description

Usage

Value

Arguments