MetaRVMCheck

<p>R6 class to handle MetaRVM checkpoint data. This class is a simplified
version of MetaRVMConfig tailored for storing and accessing simulation
checkpoints.</p>

Simulates respiratory virus epidemics using meta-population compartmental models following Fadikar et. al. (2025) <doi:10.1101/2025.05.05.25327021>. 'MetaRVM' implements a stochastic
SEIRD (Susceptible-Exposed-Infected-Recovered-Dead) framework with demographic
stratification by age, race, and geographic zones. It supports complex
epidemiological scenarios including asymptomatic and presymptomatic transmission,
hospitalization dynamics, vaccination schedules, and time-varying contact patterns
via mixing matrices.

Arindam Fadikar

MetaRVM

Meta-Population Compartmental Model for Respiratory Virus
Diseases

Charles Macal

Martinez Moyano Ignacio Javier

Ozik Jonathan

MetaRVMCheck function

Author

<p><code>MetaRVM::MetaRVMConfig</code> -&gt; <code>MetaRVMCheck</code></p>

Super class

<p><div class="r6-fields"></div></p><dl>
<dt><code>check_data</code></dt>
<dd><p>List containing all parsed checkpoint data</p></dd><p></p><p>
</p></dl><p></p>

Public fields


<div class="section" id="public-methods">
<h3>Public methods</h3><p></p><p><ul>
<li><p><a href="/link/MetaRVMCheck%24new()?package=MetaRVM&version=1.0.0" data-mini-rdoc="MetaRVM::MetaRVMCheck$new()"><code>MetaRVMCheck$new()</code></a></p></li>
<li><p><a href="/link/MetaRVMCheck%24clone()?package=MetaRVM&version=1.0.0" data-mini-rdoc="MetaRVM::MetaRVMCheck$clone()"><code>MetaRVMCheck$clone()</code></a></p></li>
</ul></p><p></p></div><p><details><summary>Inherited methods</summary>
<ul>
<li><span class="pkg-link" data-pkg="MetaRVM" data-topic="MetaRVMConfig" data-id="get"><a href="/link/MetaRVM%3A%3AMetaRVMConfig%24get()?package=MetaRVM&version=1.0.0" data-mini-rdoc="MetaRVM::MetaRVM::MetaRVMConfig$get()"><code>MetaRVM::MetaRVMConfig$get()</code></a></span></li>
<li><span class="pkg-link" data-pkg="MetaRVM" data-topic="MetaRVMConfig" data-id="get_age_categories"><a href="/link/MetaRVM%3A%3AMetaRVMConfig%24get_age_categories()?package=MetaRVM&version=1.0.0" data-mini-rdoc="MetaRVM::MetaRVM::MetaRVMConfig$get_age_categories()"><code>MetaRVM::MetaRVMConfig$get_age_categories()</code></a></span></li>
<li><span class="pkg-link" data-pkg="MetaRVM" data-topic="MetaRVMConfig" data-id="get_all"><a href="/link/MetaRVM%3A%3AMetaRVMConfig%24get_all()?package=MetaRVM&version=1.0.0" data-mini-rdoc="MetaRVM::MetaRVM::MetaRVMConfig$get_all()"><code>MetaRVM::MetaRVMConfig$get_all()</code></a></span></li>
<li><span class="pkg-link" data-pkg="MetaRVM" data-topic="MetaRVMConfig" data-id="get_pop_map"><a href="/link/MetaRVM%3A%3AMetaRVMConfig%24get_pop_map()?package=MetaRVM&version=1.0.0" data-mini-rdoc="MetaRVM::MetaRVM::MetaRVMConfig$get_pop_map()"><code>MetaRVM::MetaRVMConfig$get_pop_map()</code></a></span></li>
<li><span class="pkg-link" data-pkg="MetaRVM" data-topic="MetaRVMConfig" data-id="get_race_categories"><a href="/link/MetaRVM%3A%3AMetaRVMConfig%24get_race_categories()?package=MetaRVM&version=1.0.0" data-mini-rdoc="MetaRVM::MetaRVM::MetaRVMConfig$get_race_categories()"><code>MetaRVM::MetaRVMConfig$get_race_categories()</code></a></span></li>
<li><span class="pkg-link" data-pkg="MetaRVM" data-topic="MetaRVMConfig" data-id="get_zones"><a href="/link/MetaRVM%3A%3AMetaRVMConfig%24get_zones()?package=MetaRVM&version=1.0.0" data-mini-rdoc="MetaRVM::MetaRVM::MetaRVMConfig$get_zones()"><code>MetaRVM::MetaRVMConfig$get_zones()</code></a></span></li>
<li><span class="pkg-link" data-pkg="MetaRVM" data-topic="MetaRVMConfig" data-id="list_parameters"><a href="/link/MetaRVM%3A%3AMetaRVMConfig%24list_parameters()?package=MetaRVM&version=1.0.0" data-mini-rdoc="MetaRVM::MetaRVM::MetaRVMConfig$list_parameters()"><code>MetaRVM::MetaRVMConfig$list_parameters()</code></a></span></li>
<li><span class="pkg-link" data-pkg="MetaRVM" data-topic="MetaRVMConfig" data-id="parameter_summary"><a href="/link/MetaRVM%3A%3AMetaRVMConfig%24parameter_summary()?package=MetaRVM&version=1.0.0" data-mini-rdoc="MetaRVM::MetaRVM::MetaRVMConfig$parameter_summary()"><code>MetaRVM::MetaRVMConfig$parameter_summary()</code></a></span></li>
<li><span class="pkg-link" data-pkg="MetaRVM" data-topic="MetaRVMConfig" data-id="print"><a href="/link/MetaRVM%3A%3AMetaRVMConfig%24print()?package=MetaRVM&version=1.0.0" data-mini-rdoc="MetaRVM::MetaRVM::MetaRVMConfig$print()"><code>MetaRVM::MetaRVMConfig$print()</code></a></span></li>
<li><span class="pkg-link" data-pkg="MetaRVM" data-topic="MetaRVMConfig" data-id="set"><a href="/link/MetaRVM%3A%3AMetaRVMConfig%24set()?package=MetaRVM&version=1.0.0" data-mini-rdoc="MetaRVM::MetaRVM::MetaRVMConfig$set()"><code>MetaRVM::MetaRVMConfig$set()</code></a></span></li>
</ul>
</details></p><p><hr>
<a id="method-MetaRVMCheck-new"></a></p><div class="section" id="method-new-">
<h3>Method <code>new()</code></h3>
<p>Initialize a new MetaRVMCheck object</p><div class="section" id="usage">
<h4>Usage</h4>
<p><div class="r"></div></p><pre><code>MetaRVMCheck$new(input)</code></pre><p></p></div><p></p>
</div><p></p><p><div class="section" id="arguments">
<h4>Arguments</h4>
<p><div class="arguments"></div></p><dl>
<dt><code>input</code></dt>
<dd><p>A list containing checkpoint data.</p></dd></dl></div></p><p>
</p><p></p>

<div class="section" id="returns">
<h4>Returns</h4>
<p>A new <code>MetaRVMCheck</code> object.</p>
</div><p></p><p></p><p><hr>
<a id="method-MetaRVMCheck-clone"></a></p><div class="section" id="method-clone-">
<h3>Method <code>clone()</code></h3>
<p>The objects of this class are cloneable with this method.</p><div class="section" id="usage">
<h4>Usage</h4>
<p><div class="r"></div></p><pre><code>MetaRVMCheck$clone(deep = FALSE)</code></pre><p></p></div><p></p>
</div><p></p><p><div class="section" id="arguments">
<h4>Arguments</h4>
<p><div class="arguments"></div></p><dl>
<dt><code>deep</code></dt>
<dd><p>Whether to make a deep clone.</p></dd></dl></div></p><p>
</p><p></p>
<p></p><p>
</p>

Methods

MetaRVM Checkpoint Class — MetaRVMCheck

<p><div class="r6-fields"></p><dl>
<dt><code>check_data</code></dt>
<dd><p>List containing all parsed checkpoint data</p></dd>


</dl><p></div></p>


<div class='section' id='public-methods'>
<h3>Public methods</h3>

<ul>
<li><p><a href='#method-MetaRVMCheck-new'><code>MetaRVMCheck$new()</code></a></p></li>
<li><p><a href='#method-MetaRVMCheck-clone'><code>MetaRVMCheck$clone()</code></a></p></li>
</ul>

</div><p><details><summary>Inherited methods</summary>
<ul>
<li><span class="pkg-link" data-pkg="MetaRVM" data-topic="MetaRVMConfig" data-id="get"><a href='../../MetaRVM/html/MetaRVMConfig.html#method-MetaRVMConfig-get'><code>MetaRVM::MetaRVMConfig$get()</code></a></span></li>
<li><span class="pkg-link" data-pkg="MetaRVM" data-topic="MetaRVMConfig" data-id="get_age_categories"><a href='../../MetaRVM/html/MetaRVMConfig.html#method-MetaRVMConfig-get_age_categories'><code>MetaRVM::MetaRVMConfig$get_age_categories()</code></a></span></li>
<li><span class="pkg-link" data-pkg="MetaRVM" data-topic="MetaRVMConfig" data-id="get_all"><a href='../../MetaRVM/html/MetaRVMConfig.html#method-MetaRVMConfig-get_all'><code>MetaRVM::MetaRVMConfig$get_all()</code></a></span></li>
<li><span class="pkg-link" data-pkg="MetaRVM" data-topic="MetaRVMConfig" data-id="get_pop_map"><a href='../../MetaRVM/html/MetaRVMConfig.html#method-MetaRVMConfig-get_pop_map'><code>MetaRVM::MetaRVMConfig$get_pop_map()</code></a></span></li>
<li><span class="pkg-link" data-pkg="MetaRVM" data-topic="MetaRVMConfig" data-id="get_race_categories"><a href='../../MetaRVM/html/MetaRVMConfig.html#method-MetaRVMConfig-get_race_categories'><code>MetaRVM::MetaRVMConfig$get_race_categories()</code></a></span></li>
<li><span class="pkg-link" data-pkg="MetaRVM" data-topic="MetaRVMConfig" data-id="get_zones"><a href='../../MetaRVM/html/MetaRVMConfig.html#method-MetaRVMConfig-get_zones'><code>MetaRVM::MetaRVMConfig$get_zones()</code></a></span></li>
<li><span class="pkg-link" data-pkg="MetaRVM" data-topic="MetaRVMConfig" data-id="list_parameters"><a href='../../MetaRVM/html/MetaRVMConfig.html#method-MetaRVMConfig-list_parameters'><code>MetaRVM::MetaRVMConfig$list_parameters()</code></a></span></li>
<li><span class="pkg-link" data-pkg="MetaRVM" data-topic="MetaRVMConfig" data-id="parameter_summary"><a href='../../MetaRVM/html/MetaRVMConfig.html#method-MetaRVMConfig-parameter_summary'><code>MetaRVM::MetaRVMConfig$parameter_summary()</code></a></span></li>
<li><span class="pkg-link" data-pkg="MetaRVM" data-topic="MetaRVMConfig" data-id="print"><a href='../../MetaRVM/html/MetaRVMConfig.html#method-MetaRVMConfig-print'><code>MetaRVM::MetaRVMConfig$print()</code></a></span></li>
<li><span class="pkg-link" data-pkg="MetaRVM" data-topic="MetaRVMConfig" data-id="set"><a href='../../MetaRVM/html/MetaRVMConfig.html#method-MetaRVMConfig-set'><code>MetaRVM::MetaRVMConfig$set()</code></a></span></li>
</ul>
</details>

<hr>
<a id="method-MetaRVMCheck-new"></a></p><div class='section' id='method-new-'>
<h3>Method <code>new()</code></h3>
<p>Initialize a new MetaRVMCheck object</p><div class='section' id='usage'>
<h4>Usage</h4>
<p><div class="r"></p><pre><code>MetaRVMCheck$new(input)</code></pre><p></div></p>
</div>

<div class='section' id='arguments'>
<h4>Arguments</h4>
<p><div class="arguments"></p><dl>
<dt><code>input</code></dt>
<dd><p>A list containing checkpoint data.</p></dd>


</dl><p></div></p>
</div>
<div class='section' id='returns'>
<h4>Returns</h4>
<p>A new <code>MetaRVMCheck</code> object.</p>
</div>

</div><p><hr>
<a id="method-MetaRVMCheck-clone"></a></p><div class='section' id='method-clone-'>
<h3>Method <code>clone()</code></h3>
<p>The objects of this class are cloneable with this method.</p><div class='section' id='usage'>
<h4>Usage</h4>
<p><div class="r"></p><pre><code>MetaRVMCheck$clone(deep = FALSE)</code></pre><p></div></p>
</div>

<div class='section' id='arguments'>
<h4>Arguments</h4>
<p><div class="arguments"></p><dl>
<dt><code>deep</code></dt>
<dd><p>Whether to make a deep clone.</p></dd>


</dl><p></div></p>
</div>

</div>


MetaRVMCheck: MetaRVM Checkpoint Class

Description

Arguments

Author

Super class

Public fields

Methods

Public methods

Method `new()`

Usage

Arguments

Returns

Method `clone()`

Usage

Arguments

Details

Description

Arguments

Author

Super class

Public fields

Methods

Public methods

Method new()

Usage

Arguments

Returns

Method clone()

Usage

Arguments

Details

Method `new()`

Method `clone()`