format_metarvm_output

This function formats raw MetaRVM simulation output by:<ol>
<li>Converting time steps to calendar dates</li>
<li>Adding demographic attributes from population mapping</li>
<li>Handling different disease states appropriately:<ul>
<li>Regular states (S, E, I, etc.): Keep values at integer time points</li>
<li>New count states (n_ prefix): Sum pairs to get daily counts</li>
</ul></li>
</ol>

Simulates respiratory virus epidemics using meta-population compartmental models following Fadikar et. al. (2025) <doi:10.1101/2025.05.05.25327021>. 'MetaRVM' implements a stochastic
SEIRD (Susceptible-Exposed-Infected-Recovered-Dead) framework with demographic
stratification by age, race, and geographic zones. It supports complex
epidemiological scenarios including asymptomatic and presymptomatic transmission,
hospitalization dynamics, vaccination schedules, and time-varying contact patterns
via mixing matrices.

Arindam Fadikar

MetaRVM

Meta-Population Compartmental Model for Respiratory Virus
Diseases

Charles Macal

Martinez Moyano Ignacio Javier

Ozik Jonathan

format_metarvm_output function

<dl><dt>sim_output</dt>
<dd>data.table containing raw simulation output from <code>meta_sim</code></dd>
<dt>config</dt>
<dd>MetaRVMConfig object or config list containing parameters</dd></dl>

Arguments

Format MetaRVM simulation output — format_metarvm_output

<dl>

<dt>sim_output</dt>
<dd>data.table containing raw simulation output from <code>meta_sim</code></dd>


<dt>config</dt>
<dd>MetaRVMConfig object or config list containing parameters</dd>

</dl>

format_metarvm_output: Format MetaRVM simulation output

Description

Usage

Value

Arguments