exampleIonLib


The function MetReport requires a spectral library for identifying metabolites in GC-MS samples.


datasets

Metab is an R package for high-throughput processing of metabolomics data analysed by the Automated Mass Spectral Deconvolution and Identification System (AMDIS) (http://chemdata.nist.gov/mass-spc/amdis/downloads/). In addition, it performs statistical hypothesis test (t-test) and analysis of variance (ANOVA). Doing so, Metab considerably speed up the data mining process in metabolomics and produces better quality results. Metab was developed using interactive features, allowing users with lack of R knowledge to appreciate its functionalities.

Raphael Aggio

Metab

Metab: An R Package for a High-Throughput Analysis of
Metabolomics Data Generated by GC-MS.

exampleIonLib function

A data frame containing a spectral library.
  <dl>
    <dt><code>Name</code></dt><dd>Example of spectral library</dd> <dt><code>RT</code></dt><dd>Example of spectral library</dd> <dt><code>ion2to1</code></dt><dd>Example of spectral library</dd> <dt><code>ion3to1</code></dt><dd>Example of spectral library</dd> <dt><code>ion4to1</code></dt><dd>Example of spectral library</dd> <dt><code>ref_ion1</code></dt><dd>Example of spectral library</dd> <dt><code>ref_ion2</code></dt><dd>Example of spectral library</dd> <dt><code>ref_ion3</code></dt><dd>Example of spectral library</dd> <dt><code>ref_ion4</code></dt><dd>Example of spectral library</dd> </dl> 

Format

The function MetReport requires a spectral library for identifying metabolites in GC-MS samples.

exampleIonLib: An example of the ionLib required by Metab.

Description

Usage

Arguments

Format

Examples