ANOVA2.Anal

Input the name of the created mSetObj (see InitDataObjects)

mSetObj

thresh

Select method for p-value correction, bonferroni, holm or fdr

p.cor

Select b to perform between-subjects ANOVA, and w for within-subjects ANOVA

type

Specify 1 for ANOVA type 1, or 3 for ANOVA type 3

aov.type

Numeric, whether to consider interaction in two-way repeated ANOVA (1) or not (0).

use.interact

This package contains the R functions and libraries underlying the popular MetaboAnalyst web server, including 500 functions for data processing, normalization, statistical analysis, metabolite set enrichment analysis, metabolic pathway analysis, and biomarker analysis. The package is synchronized with the web server. After installing and loading the package, users will be able to reproduce the same results from their local computers using the corresponding R command history downloaded from MetaboAnalyst, to achieve maximum flexibility and reproducibility.

ANOVA2.Anal: Perform Two-way ANOVA

Description

Usage

Arguments