CalculateHyperScore

<p>Input the name of the created mSetObj (see InitDataObjects)</p>

mSetObj

<p>Over-representation analysis using hypergeometric tests
The probability is calculated from obtaining equal or higher number
of hits using 1-phyper. Since phyper is a cumulative probability,
to get P(X&gt;=hit.num) =&gt; P(X&gt;(hit.num-1))</p>

This package contains the R functions and libraries underlying the popular MetaboAnalyst web server, including 500 functions for data processing, normalization, statistical analysis, metabolite set enrichment analysis, metabolic pathway analysis, and biomarker analysis. The package is synchronized with the web server. After installing and loading the package, users will be able to reproduce the same results from their local computers using the corresponding R command history downloaded from MetaboAnalyst, to achieve maximum flexibility and reproducibility.

Jasmine Chong

CalculateHyperScore: Over-representation analysis using hypergeometric tests

Description

Usage

Arguments