CalculateQeaScore

Input the name of the created mSetObj (see InitDataObjects)

mSetObj

Indicate the pathway topology analysis, "rbc" for relative-betweeness centrality, 
and "dgr" for out-degree centrality.

nodeImp

Indicate the pathway enrichment analysis, global test is "gt" and global ancova is "ga".

method

Calculate quantitative enrichment score

This package contains the R functions and libraries underlying the popular MetaboAnalyst web server, including 500 functions for data processing, normalization, statistical analysis, metabolite set enrichment analysis, metabolic pathway analysis, and biomarker analysis. The package is synchronized with the web server. After installing and loading the package, users will be able to reproduce the same results from their local computers using the corresponding R command history downloaded from MetaboAnalyst, to achieve maximum flexibility and reproducibility.

CalculateQeaScore: Calculate quantitative enrichment score

Description

Usage

Arguments