CrossReferencing

Input the name of the created mSetObj (see InitDataObjects).

mSetObj

Input the query type, "name" for compound names, "hmdb" for HMDB IDs, "kegg" for KEGG IDs, "pubchem"
for PubChem CIDs, "chebi" for ChEBI IDs, "metlin" for METLIN IDs, and "hmdb_kegg" for a both KEGG and HMDB IDs.

q.type

Logical, T to cross reference to HMDB, F to not.

hmdb

Logical, T to cross reference to PubChem, F to not.

pubchem

Logical, T to cross reference to CheBI, F to not.

chebi

Logical, T to cross reference to KEGG, F to not.

kegg

Logical, T to cross reference to MetLin, F to not.

metlin

Given a list of compound names or ids
find matched name or IDs from selected databases

This package contains the R functions and libraries underlying the popular MetaboAnalyst web server, including 500 functions for data processing, normalization, statistical analysis, metabolite set enrichment analysis, metabolic pathway analysis, and biomarker analysis. The package is synchronized with the web server. After installing and loading the package, users will be able to reproduce the same results from their local computers using the corresponding R command history downloaded from MetaboAnalyst, to achieve maximum flexibility and reproducibility.

Jasmine Chong

MetaboAnalystR

An R Package for Comprehensive Analysis of Metabolomics Data

Jianguo Xia

CrossReferencing function

Various functions for mapping b/w names &amp; database identifiers
Given a list of compound names or ids, find matched name or ids from selected databases — CrossReferencing

Various functions for mapping b/w names &amp; database identifiers
Given a list of compound names or ids, find matched name or ids from selected databases

CrossReferencing: Various functions for mapping b/w names & database identifiers Given a list of compound names or ids, find matched name or ids from selected databases

Description

Usage

Arguments