FormatPeakList

The object created using the PerformPeakAnnotation.

annotPeaks

The object created using the SetAnnotationParam function, 
containing user's specified or default parameters for downstream 
raw MS data pre-processing.

annParams

Logical, filter out all isotopes except for [M]+ for 
positive ion mode and [M]- for negative ion mode. By default it is 
set to true.

filtIso

Logical, filter out all adducts except [M+H]+ for
positive ion more and [M-H]- for negative ion mode. By default it is set to false.

filtAdducts

Numeric, specify the threshold to remove features
missing in X
that are missing from 50

missPercent

This package contains the R functions and libraries underlying the popular MetaboAnalyst web server, including 500 functions for data processing, normalization, statistical analysis, metabolite set enrichment analysis, metabolic pathway analysis, and biomarker analysis. The package is synchronized with the web server. After installing and loading the package, users will be able to reproduce the same results from their local computers using the corresponding R command history downloaded from MetaboAnalyst, to achieve maximum flexibility and reproducibility.

FormatPeakList: Format Peak List This function formats the CAMERA output to a usable format for MetaboAanlyst.

Usage

Arguments