ImportRawMSData

Character, input the first group label.

grpA

Numeric, input the number of samples in group A.

numA

Character, input the second group label.

grpB

Numeric, input the number of samples in group B.

numB

Character, input the format of the image to create.

format

Numeric, input the dpi of the image to create.

Numeric, input the width of the image to create.

width

This function handles the reading in of 
raw MS data (.mzML, .CDF and .mzXML). Users must set 
their working directory to the file containing their raw 
data and specify the group labels. The function will output
two chromatograms into the user's working directory, a 
base peak intensity chromatogram (BPIC) and a total ion 
chromatogram (TIC).

This package contains the R functions and libraries underlying the popular MetaboAnalyst web server, including 500 functions for data processing, normalization, statistical analysis, metabolite set enrichment analysis, metabolic pathway analysis, and biomarker analysis. The package is synchronized with the web server. After installing and loading the package, users will be able to reproduce the same results from their local computers using the corresponding R command history downloaded from MetaboAnalyst, to achieve maximum flexibility and reproducibility.

ImportRawMSData: Import raw MS data

Description

Usage

Arguments