PerformLimmaDE

Input name of the created mSet Object

mSetObj

Input the name of the individual dataset for normalization.

dataName

Numeric, input the p-value (FDR) cutoff.

p.lvl

Numeric, input the fold-change (FC) cutoff.

fc.lvl

This function performs DE analysis of individually-uploaded data prior to meta-analysis.

This package contains the R functions and libraries underlying the popular MetaboAnalyst web server, including 500 functions for data processing, normalization, statistical analysis, metabolite set enrichment analysis, metabolic pathway analysis, and biomarker analysis. The package is synchronized with the web server. After installing and loading the package, users will be able to reproduce the same results from their local computers using the corresponding R command history downloaded from MetaboAnalyst, to achieve maximum flexibility and reproducibility.

PerformLimmaDE: Perform differential expression analysis using Limma for individually-uploaded data.

Description

Usage

Arguments