PerformMummichog

Input the name of the created mSetObj object

mSetObj

Input the name of the organism library, default is hsa

Numeric, the number of permutations to perform

permNum

This is the main function that performs the mummichog analysis.

This package contains the R functions and libraries underlying the popular MetaboAnalyst web server, including 500 functions for data processing, normalization, statistical analysis, metabolite set enrichment analysis, metabolic pathway analysis, and biomarker analysis. The package is synchronized with the web server. After installing and loading the package, users will be able to reproduce the same results from their local computers using the corresponding R command history downloaded from MetaboAnalyst, to achieve maximum flexibility and reproducibility.

PerformMummichog: Main function to perform mummichog

Description

Usage

Arguments