PlotEIC

The object created using the InspectRawMSData function,
containing the raw MS data.

raw_data

Numeric, specify the minimum bound of the retention time range.

rt_mn

Numeric, specify the maximum bound of the retention time range.

rt_mx

Numeric, specify the minimum bound of the m/z range.

mz_mn

Numeric, specify the maximum bound of the m/z range.

mz_mx

Character, if "sum", creates a total ion chromatogram. 
If "max", creates a base peak chromatogram. By default it is set 
to "sum".

aggreg

Character, input the format of the image to create.

format

Numeric, input the dpi of the image to create.

Numeric, input the width of the image to create.

width

Plot EIC
This functionn creates an extracted ion chromatogram (EIC) for a specific
m/z and retention time. This is used for quality-control of raw m/s data.

This package contains the R functions and libraries underlying the popular MetaboAnalyst web server, including 500 functions for data processing, normalization, statistical analysis, metabolite set enrichment analysis, metabolic pathway analysis, and biomarker analysis. The package is synchronized with the web server. After installing and loading the package, users will be able to reproduce the same results from their local computers using the corresponding R command history downloaded from MetaboAnalyst, to achieve maximum flexibility and reproducibility.

Jasmine Chong

MetaboAnalystR

An R Package for Comprehensive Analysis of Metabolomics Data

Jianguo Xia

PlotEIC function

Plot EIC
This functionn creates an extracted ion chromatogram (EIC) for a specific
m/z and retention time. This is used for quality-control of raw m/s data. — PlotEIC

Plot EIC
This functionn creates an extracted ion chromatogram (EIC) for a specific
m/z and retention time. This is used for quality-control of raw m/s data.

PlotEIC: Plot EIC This functionn creates an extracted ion chromatogram (EIC) for a specific m/z and retention time. This is used for quality-control of raw m/s data.

Description

Usage

Arguments