MetaboAnalystR (version 2.0.0)

PlotHeatMap2: Plot heatmap visualization for time-series data

Description

Plot heatmap visualization for time-series data

Usage

PlotHeatMap2(mSetObj=NA, imgName, format="png", dpi=72, width=NA, smplDist="pearson", clstDist="average", colors="bwm", viewOpt="overview", hiRes=FALSE, sortInx = 1, useSigFeature, drawBorder)

Arguments

mSetObj

Input the name of the created mSetObj (see InitDataObjects)

imgName

Input a name for the plot

format

Select the image format, "png", or "pdf".

dpi

Input the dpi. If the image format is "pdf", users need not define the dpi. For "png" images, the default dpi is 72. It is suggested that for high-resolution images, select a dpi of 300.

width

Input the width, there are 2 default widths, the first, width = NULL, is 10.5. The second default is width = 0, where the width is 7.2. Otherwise users can input their own width.

smplDist

Select distance measure: euclidean, pearson, or minkowski

clstDist

Select clustering algorithm: ward, average, complete, single

colors

Select heatmap colors: bwm, gray

viewOpt

Select overview or detailed view: overview or detail

hiRes

Select high-resolution or not: logical, default set to F

sortInx

Sort by index

useSigFeature

Use significant features only: F or T (default false)

drawBorder

Show cell borders: F or T (default F)