This function creates two 3D PLS-DA score plots, the first is static for Analysis Report purposes, as well as an interactive 3D plot using the plotly R package. The 3D score plot is saved in the created mSetObj (mSetObj$imgSet$plsda.3d). To view the score plot, if the name of your mSetObj is mSet, enter "mSet$imgSet$plsda.3d" to view the interactive score plot.
PlotPLS3DScoreImg(mSetObj = NA, imgName, format = "png", dpi = 72,
width = NA, inx1, inx2, inx3, angl)Input name of the created mSet Object
Input a name for the plot
Select the image format, "png", or "pdf".
Input the dpi. If the image format is "pdf", users need not define the dpi. For "png" images, the default dpi is 72. It is suggested that for high-resolution images, select a dpi of 300.
Input the width, there are 2 default widths, the first, width = NULL, is 10.5. The second default is width = 0, where the width is 7.2. Otherwise users can input their own width.
Numeric, indicate the number of the principal component for the x-axis of the loading plot.
Numeric, indicate the number of the principal component for the y-axis of the loading plot.
Numeric, indicate the number of the principal component for the z-axis of the loading plot.
Input the angle