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MetaboAnalystR (version 2.0.0)

PlotPathSummary: Plot a scatterplot (circle) overview of the matched pathways

Description

x axis is the pathway impact factor y axis is the p value (from ORA or globaltest) return the circle information

Usage

PlotPathSummary(mSetObj = NA, imgName, format = "png", dpi = 72,
  width = NA, x, y)

Arguments

mSetObj

Input name of the created mSet Object

imgName

Input a name for the plot

format

Select the image format, "png", or "pdf".

dpi

Input the dpi. If the image format is "pdf", users need not define the dpi. For "png" images, the default dpi is 72. It is suggested that for high-resolution images, select a dpi of 300.

width

Input the width, there are 2 default widths, the first, width = NULL, is 10.5.

x

Input the X

y

Input the Y