PlotPowerProfile

Input the name of the created mSetObj (see InitDataObjects)

mSetObj

Specify the false-discovery rate level.

fdr.lvl

Specify the maximum sample size, the number must be between 60-1000.

smplSize

Specify the name to save the image as.

imgName

Specify the format of the image to save it as, either "png" or "pdf".

format

Specify the dots-per-inch (dpi). By default it is 72, for publications
the recommended dpi is 300.

Specify the width of the image. NA specifies a width of 9, 0 specifies a width
of 7, otherwise input a chosen width.

width

Plot power profile, specifying FDR level and sample size. It will 
return the image as well as the predicted power at various sample sizes.

This package contains the R functions and libraries underlying the popular MetaboAnalyst web server, including 500 functions for data processing, normalization, statistical analysis, metabolite set enrichment analysis, metabolic pathway analysis, and biomarker analysis. The package is synchronized with the web server. After installing and loading the package, users will be able to reproduce the same results from their local computers using the corresponding R command history downloaded from MetaboAnalyst, to achieve maximum flexibility and reproducibility.

PlotPowerProfile: Plot power profile

Description

Usage

Arguments