PlotQEA.MetSet

Input the name of the created mSetObj (see InitDataObjects)

mSetObj

Input the name of the metabolite set

setNM

Select the image format, "png", or "pdf".

format

Input the dpi. If the image format is "pdf", users need not define the dpi. For "png" images, 
the default dpi is 72. It is suggested that for high-resolution images, select a dpi of 300.

Input the width, there are 2 default widths, the first, width = NULL, is 10.5.
The second default is width = 0, where the width is 7.2. Otherwise users can input their own width.

width

View individual compounds related to a given metabolite set
Functions for various plots for enrichment analysis

This package contains the R functions and libraries underlying the popular MetaboAnalyst web server, including 500 functions for data processing, normalization, statistical analysis, metabolite set enrichment analysis, metabolic pathway analysis, and biomarker analysis. The package is synchronized with the web server. After installing and loading the package, users will be able to reproduce the same results from their local computers using the corresponding R command history downloaded from MetaboAnalyst, to achieve maximum flexibility and reproducibility.

PlotQEA.MetSet: View individual compounds related to a given metabolite set

Description

Usage

Arguments