For labelling interesting points, it is defined by the following rules: need to be signficant (sig.inx) and or 2. top 5 p, or 2. top 5 left, or 3. top 5 right.
PlotVolcano(mSetObj=NA, imgName, plotLbl, format="png", dpi=72, width=NA)Input the name of the created mSetObj (see InitDataObjects)
Input a name for the plot
Logical, plot labels, 1 for yes and 0 for no.
Select the image format, "png", or "pdf".
Input the dpi. If the image format is "pdf", users need not define the dpi. For "png" images, the default dpi is 72. It is suggested that for high-resolution images, select a dpi of 300.
Input the width, there are 2 default widths, the first, width = NULL, is 10.5. The second default is width = 0, where the width is 7.2. Otherwise users can input their own width.